Aside

Contact

Skills

Omics data analysis:

Programming/scripting:

Other (informatics):

Experimental:

Languages:

Development

chromHMMviewR
DPomics (ongoing)
ATAC-seq snakemake (ongoing)
More on my GitHub profile

Disclaimer

References available upon request.
Build with pagedown, code here.
Last updated on 2021-05-27.

Main

Adrià Mitjavila Ventura

Bioinformatician at Istituto Europeo di Oncologia | MSc

Biotechnologist living around computers, interested in data analysis to support experimental research as well as in pure (bio)computational experiments and in software/pipeline development. More on my website.

Experience

Bioinformatician

Institut Josep Carreras, Vavouri’s lab

Badalona, Spain

08/2021 - Present

Bioinformatician

Istituto Europeo di Oncologia, Pasini’s lab

Milan, Italy

07/2019 - 07/2021

  • Study of Wnt/\(\beta\)catenin signaling pathway -and others- in the context of colorectal cancer and stem cell development.
  • Analysis and integration of RNA-seq, ChIP-seq and ATAC-seq data.
  • Development of a Snakemake pipeline for ATAC-seq.

Master’s thesis student & Research assistant

Instituto de Biomedicina de Sevilla, Gene expression

Seville, Spain

09/2017 - 10/2018

  • Study of Xrn1 and Ccr4 roles in yeast nucleosome architecture and gene transcription.
  • Analysis of MNase-seq data. Performance and analysis of MNase-qPCR experiments.

Internship & Bachelor’s thesis student

Microbial. Sistemes i aplicacions analítiques, S.L.

Girona, Spain

09/2016 - 06/2017

  • Microbiological and molecular analyses for pathogen detection and food forensics.
  • Study of butyrate effects on the ileal microbiota of colectomized colorectal cancer patients.
  • qPCR of intestinal biopsies to detect/quantify bacterial genders.
  • Statistical analysis of high-throughput sequencing data to quantify bacteria species.

Education

MSc in Bioinformatics and Biostatistics

Universitat Oberta de Catalunya

Online

2018 - Present

MSc in Molecular Genetics and Biotechnology

Universidad de Sevilla - Grade: 9.33/10

Seville, Spain

2017 - 2018

  • Master’s thesis: Influence of Xrn1 in nucleosome positioning across Saccharomyces cerevisiae genome and its effects in transcription. Grade: 9.2/10

BSc in Biotechnology

Universitat de Girona - Grade: 8.12/10

Girona, Spain

2012 - 2017

  • Bachelor’s thesis: Butyrate-induced changes in the diversity of intestinal mucosa-associated microbiota in colorectal cancer patients submitted to a lateral ileostomy. Grade: 9.4/10

Publications

Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration

Begley V et al. RNA Biology. DOI: 10.1080/15476286.2020.1845504.

N/A

2020